Author

Savvas Paragkamian

University of CreteORCID 0000-0002-8508-2521Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Approach:statistical model· 3 Research Focus:host-pathogen & immune response· 2 Organism:plant (other)· 2 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Emmanouil A. MarkakisiD· 3 shared Nikolaos ArapitsasiD· 3 shared Panagiotis F. SarrisiD· 3 shared Stefanos K. SoultatosiD· 3 shared Christos A. ChristakisiD· 2 shared Evangelos KaratzasiD· 2 shared Evangelos PafilisiD· 2 shared Fotis A. BaltoumasiD· 2 shared

Activity by Year

2021-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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Focal author (center)Selected co-authorORCID co-authorUnlinked name

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3 shared papersMicrobiology

Emmanouil A. MarkakisORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 21, 2026

Halophytic endophytes provide transferable immune functions for crop resilience

Vassiliki A. Michalopoulou, Stefanos K. Soultatos, Savvas Paragkamian…·Panagiotis F. Sarris

This study shows halophytic endophytes like Kushneria enhance crop immunity against pathogens through host immune responses and a novel RNA-NLR axis, without direct antagonism.

1 citation

plant (other)multiome

𝕏 PostBluesky

MicrobiologybioRxivPreprintJun 15, 2026

A Thousand Meters Deep: Vertical Profiling of the Subterranean Microbes of Gourgouthakas Cave

Savvas Paragkamian, Christos A. Christakis, Vassiliki A. Michalopoulou…·Panagiotis F. Sarris

This study explores the microbiology of Gourgouthakas Cave, identifying diverse microbes and their potential as biocontrol agents against agricultural pathogens.

DOI 10.64898/2026.03.19.712943

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintFeb 6, 2026

Unravelling the genomic and functional arsenal of Bacilli endophytes from plants with different lifestyles

Nikolaos Arapitsas, Christos A. Christakis, Savvas Paragkamian…·Panagiotis F. Sarris

This study identifies novel Bacilli endophytes from plants with different lifestyles, revealing extensive biosynthetic potential and functional diversity.

DOI 10.64898/2026.02.06.704400

plant (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJun 1, 2022

Arena3Dweb: Interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration

Maria Kokoli, Evangelos Karatzas, Fotis A. Baltoumas…·Georgios A. Pavlopoulos

Arena3Dweb provides an interactive 3D visualization tool for multi-layered networks with clustering, directional connections, and integration capabilities.

22 citations

experimental assaysoftware / tool

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedOct 4, 2021

OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis

Fotis A. Baltoumas, Sofia Zafeiropoulou, Evangelos Karatzas…·Georgios A. Pavlopoulos

OnTheFly2.0 automates biomedical entity recognition and analysis from documents, revealing inflammatory and senescence pathways in severe COVID-19.

24 citations

humanstatistical model

𝕏 PostBluesky