ImmunologyScience ImmunologyPeer-reviewed
HIV-1 infection is associated with depletion of germinal center B cells and a decrease in IgA+ plasma cells in the GI tract
Francesca Cossarini, Joan Shang, Azra Krek…·Saurabh Mehandru
7 citations
Author
Francesca Petralia
Icahn School of Medicine at Mount SinaiORCID 0000-0001-5096-9854Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2020-2024 · peak 3/yrCo-Author Collaboration Network
10 top collaborators · 21 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship6 papers
Recent·Most cited
- BioinformaticsbioRxivPreprint
CPTAC Pancancer Phosphoproteomics Kinase Enrichment Analysis with ProKAP Provides Insights into Immunogenic Signaling Pathways
Anna Pamela Calinawan, Weiping Ma, John Erol Evangelista…·Pei Wang
The paper analyzes CPTAC phosphoproteomics data to identify kinase activity differences between tumor and normal tissues across cancers and develops a web portal for querying kinase activity scores and associated data.
1 citation - BioinformaticsbioRxivPreprint
BayesDeBulk: A Flexible Bayesian Algorithm for the Deconvolution of Bulk Tumor Data
Francesca Petralia, Azra Krek, Anna Pamela Calinawan…·Pei Wang
BayesDeBulk estimates immune and stromal cell composition from bulk proteomic and transcriptomic data, outperforming existing tools in synthetic and real data examples.
13 citations - BioinformaticsbioRxivPreprint
DreamAI: algorithm for the imputation of proteomics data
Weiping Ma, Sunkyu Kim, Shrabanti Chowdhury…·Pei Wang
An ensemble of six imputation methods, built through the NCI-CPTAC Proteogenomics DREAM Challenge, fills missing values in labeled LC-MS/MS proteomics data, helping most for low-abundance proteins.
51 citations - BioinformaticsPROTEOMICSPeer-reviewed
ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies
Anna Pamela Calinawan, Xiaoyu Song, Jiayi Ji…·Boris A. Reva
ProTrack provides an interactive web tool for exploring CPTAC proteogenomic data across multiple cancer types, enabling users to query and visualize multi-omics profiles without coding.
15 citations - BioinformaticsPROTEOMICSPeer-reviewed
ProNetView-ccRCC: A web-based portal to interactively explore clear cell renal cell carcinoma proteogenomics networks
Selim Kalaycı, Francesca Petralia, Pei Wang, Zeynep Hulya Gumus
ProNetView-ccRCC provides an interactive web tool to explore phosphopeptide co-expression networks in clear cell renal cell carcinoma using CPTAC data.
7 citations