Author

Karmen Pogačar

Jožef Stefan International Postgraduate SchoolORCID 0000-0001-5190-7217Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Assay:imaging· 1

Frequent Co-Authors

Katja StareiD· 3 shared Kristina GrudeniD· 3 shared Tjaša LukaniD· 3 shared Valentina LevakiD· 3 shared Maja ZagorščakiD· 2 shared Nastja Marondini· 2 shared Anna Coll Rius· 1 shared Anže VozeljiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersPlant Biology

Katja StareORCID

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3 papers

Recent·Most cited

Plant BiologyThe Plant JournalPeer-reviewedJul 1, 2026

Robust quantification of multiplexed fluorescent protein-based biosensors in plant tissues

Valentina Levak, Anže Županič, Karmen Pogačar…·Tjaša Lukan

This study demonstrates multiplexing fluorescent biosensors in plants using linear unmixing and provides a MATLAB tool for quantification.

DOI 10.1111/tpj.71034

plant (other)imaging

𝕏 PostBluesky

Molecular BiologybioRxivPreprintMar 4, 2026

miR160 controls class III peroxidase via StARF10/17 and couples salicylic acid and ROS signaling networks in potato hypersensitive response to potato virus Y

Maja Križnik, Tjaša Lukan, Maja Zagorščak…·Kristina Gruden

The paper identifies miR160's role in regulating class III peroxidase via StARF10/17 and its integration of SA and ROS signaling during potato hypersensitive response to PVY.

DOI 10.64898/2026.03.04.709499

plant (other)statistical model

𝕏 PostBluesky

Plant BiologybioRxivPreprintApr 24, 2025

An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato

Tjaša Lukan, Barbara Kraigher, Karmen Pogačar…·Kristina Gruden

The paper identifies StPTI5 as a transcription factor that regulates plant-microbe interactions by modulating immune responses and microbial colonization in potato.

1 citation

plant (other)bulk RNA-seq

𝕏 PostBluesky