Author

Andries Marinus Bergman

The Netherlands Cancer InstituteORCID 0000-0001-5223-2549Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Wilbert T. ZwartiD· 3 shared Anniek ZaalbergiD· 2 shared Elise M. BekersiD· 2 shared Federica EduatiiD· 2 shared Jeroen KneppersiD· 2 shared Maisa N.G. van GendereniD· 2 shared Janina JanetzkoiD· 1 shared Joseph C. SiefertiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersSystems Biology

Wilbert T. ZwartORCID

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3 papers

Recent·Most cited

Molecular BiologyCommunications BiologyPeer-reviewedJul 11, 2025

TRIM33 loss reduces Androgen Receptor transcriptional output and H2BK120 ubiquitination

Nils Eickhoff, Janina Janetzko, Nuno Padrão…·Wilbert T. Zwart

The paper shows TRIM33 enhances AR activity by reducing H2BK120 ubiquitination, without affecting AR protein stability.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky

Systems Biologynpj Systems Biology and ApplicationsPeer-reviewedFeb 21, 2024

Agent-based modeling of the prostate tumor microenvironment uncovers spatial tumor growth constraints and immunomodulatory properties

Maisa N.G. van Genderen, Jeroen Kneppers, Anniek Zaalberg…·Federica Eduati

This study uses an agent-based model to simulate prostate cancer growth and ADT effects, revealing CRPC development and immunomodulatory interactions in the tumor microenvironment.

13 citations

humanexperimental assay

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Systems BiologyCancer Research CommunicationsPeer-reviewedJul 13, 2023

Exploring the onset and progression of prostate cancer through a multicellular agent-based model

Margot Passier, Maisa N.G. van Genderen, Anniek Zaalberg…·Federica Eduati

This study develops an agent-based model of prostate cancer progression, showing that stochastic interactions and systematic factors influence tumor development and clinical outcomes.

2 citations

humanexperimental assay

𝕏 PostBluesky