Author

Henri Chung

Iowa State UniversityORCID 0000-0001-5357-2887Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Iddo FriedbergiD· 4 shared Yana BrombergiD· 2 shared Ari GelleriD· 1 shared Beth HarrisiD· 1 shared Brian D. Berg· 1 shared Chengsheng ZhuiD· 1 shared Christine L. FoxxiD· 1 shared Darius BalciunasiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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4 shared papersBioinformatics

Iddo FriedbergORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

EpicTope: predicting and validating non-disruptive epitope tagging sites

Joseph M. Zinski, Parnal Joshi, Henri Chung, James Preston, Ari Geller, Finn Warrick, Brian D. Berg, Keagan Tobin, Greg Glova, Fang Liu, Zhitao Ming, Maura A. McGrail, Darius Balciunas, Iddo Friedberg, Mary C. Mullins

EpicTope predicts and validates epitope tagging sites by analyzing structural and functional features, showing effectiveness in zebrafish proteins.

Development · Mar 1, 2026Peer-reviewedDevelopmental Biology

Assembling bacterial puzzles: piecing together functions into microbial pathways

Henri Chung, Iddo Friedberg, Yana Bromberg

The paper introduces a co-occurrence-based method to identify microbial pathways from metagenomic data, showing improved detection of functional relationships compared to homology-based approaches.

NAR Genomics and Bioinformatics · Jul 2, 2024Peer-reviewedBioinformatics

Learning from the unknown: exploring the range of bacterial functionality

Yannick Mahlich, Chengsheng Zhu, Henri Chung, Pavan K. Velaga, M. Clara De Paolis Kaluza, Predrag Radivojac A, Iddo Friedberg, Yana Bromberg

This paper introduces a novel method to explore bacterial functional repertoires without reference databases, showing it outperforms existing approaches in taxonomic assignment and captures environment-driven diversity.

Nucleic Acids Research · Sep 11, 2023Peer-reviewedBioinformatics

An accurate and interpretable model for antimicrobial resistance in pathogenic Escherichia coli from livestock and companion animal species

Henri Chung, Christine L. Foxx, Jessica A. Hicks, Tod P. Stuber, Iddo Friedberg, Karin S. Dorman, Beth Harris

The paper develops an interpretable model to predict antimicrobial resistance in Escherichia coli from livestock and companion animals using genomic and phenotypic data.

PLoS ONE · Aug 24, 2023Peer-reviewedBioinformatics