Author

Paul D. Boudreau

University of MississippiORCID 0000-0001-5416-4404Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Assay:metabolomics· 1 Assay:metagenomics· 1

Frequent Co-Authors

D. Cole StevensiD· 2 shared Mohammed M. A. AhmediD· 2 shared Alan K. JarmuschiD· 1 shared Alexis D. WagneriD· 1 shared Allegra T. AroniD· 1 shared Andrea Vicini· 1 shared Andrew Ahearne· 1 shared Andrew C. McAvoyiD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

D. Cole StevensORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologyApplied and Environmental MicrobiologyPeer-reviewedDec 11, 2025

Establishing Conserved Biosynthetic Gene Clusters of the Phylum Myxococcota

Shailaja Khanal Pokharel, Nawal Shehata, Andrew Ahearne…·D. Cole Stevens

The paper identifies five conserved biosynthetic gene clusters in Myxococcota using pan-genome analysis of 195 genomes, revealing ecological roles for their metabolites.

2 citations

bacteria (other)long-read sequencing

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedJun 11, 2025

Using Repeated Lysis Steps Fractionates Between Heterotrophic and Cyanobacterial DNA Extracted from Xenic Cyanobacterial Cultures

Alexis D. Wagner, Mohammed M. A. Ahmed, Victoria Aileen Starks, Paul D. Boudreau

The paper develops an iterative lysis protocol to enrich cyanobacterial DNA from xenic cultures, improving genome assembly quality and reducing heterotrophic microbiome contamination.

2 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 6, 2022

✦ In-depth digest

A Universal Language for Finding Mass Spectrometry Data Patterns

Alan K. Jarmusch, Allegra T. Aron, Daniel Petras…·Mingxun Wang

MassQL, an open-source query language, lets users search raw mass spectrometry data from any vendor for isotope, fragmentation and neutral-loss patterns, from one file to entire public repositories.

41 citations

metabolomicssoftware / tool

𝕏 PostBluesky