Chowdhury Rafeed Rahman

GCfix corrects GC bias in cell-free DNA data across diverse coverages, outperforming existing methods with two new performance metrics.

This paper benchmarks eleven computational tools for DNA-binding protein identification, highlights limitations, and recommends improvements, providing a consensus method and datasets.

Fragle quantifies ctDNA from fragment length profiles using deep learning, showing high accuracy and improved detection limits across multiple datasets and sequencing types.

The paper develops a CNN-based tool to identify 6mA sites in rice genomes and shows it generalizes to other plant genomes.

The paper introduces iPromoter-BnCNN, a branched CNN model for identifying and classifying six types of sigma promoters, showing superior performance on benchmark and independent test datasets.