Author

Thomas G. Doak

Indiana University BloomingtonORCID 0000-0001-5487-553XUnclaimed ORCID profile · follow to get notified of new preprints

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Thomas G. Doak1 paper

Biology Disciplines

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Bioinformatics· 2

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alexander DobiniD· 1 shared Asma Bankapur· 1 shared Aviv RegeviD· 1 shared Bo LiiD· 1 shared Brian J. HaasiD· 1 shared Carrie L. GanoteiD· 1 shared Catherine J. WuiD· 1 shared Jing Yi SuniD· 1 shared

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10 top collaborators · 36 mutual co-author links

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Alexander DobinORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 24, 2020

A Tree of Human Gut Bacterial Species and its Applications to Metagenomics and Metaproteomics Data Analysis

Moses H. Stamboulian, Thomas G. Doak, Yuzhen Ye

The paper constructs a phylogenetic tree of human gut bacterial species using over 3000 genomes, including MAGs, and applies it to metagenomics and metaproteomics data analysis.

1 citation

humanmetagenomics

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BioinformaticsbioRxivPreprintMar 24, 2017

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STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

Brian J. Haas, Alexander Dobin, Nicolas Stransky…·Aviv Regev

Filtering STAR's chimeric alignments against gene annotations outscored 15 other fusion callers on 60 cancer cell lines and ran fastest, averaging 2.3 single-core hours per sample.

284 citations

humanbulk RNA-seq

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