BioinformaticsbioRxivPreprint
Quantitative characterization of cell niches in spatial atlases
Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz…·Mohammad Lotfollahi
The paper introduces NicheCompass, a graph deep learning method for characterizing cell niches in spatial omics data, showing improved performance in identifying and analyzing niches across multiple biological contexts.