Author

Helena Kuivaniemi

National Institutes of HealthORCID 0000-0001-5753-8766Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Gerard C. TrompiD· 2 shared Ajith V. PankajamiD· 1 shared Andre Gareth LoxtoniD· 1 shared Bingfang XuiD· 1 shared Brian R. Fluharty· 1 shared Caroline EastwoodiD· 1 shared Daniel E. ZakiD· 1 shared David Osumi-SutherlandiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Gerard C. TrompORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 14, 2026

Cell phenotypes in the biomedical literature: a systematic analysis and text mining corpus

Noam Rotenberg, Robert Leaman, Rezarta Islamaj…·Richard H. Scheuermann

The paper creates a manually annotated corpus of cell phenotype mentions and shows its use in improving named entity recognition and entity linking models.

1 citation

humanmouse

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GenomicsPLoS ONEPeer-reviewedDec 1, 2022

Neutrophil degranulation, NETosis and platelet degranulation pathway genes are co-induced in whole blood up to six months before tuberculosis diagnosis

Stuart Meier, James A. Seddon, Elizna Maasdorp…·Gerard C. Tromp

The paper identifies gene pathways associated with neutrophil and platelet responses that are activated up to six months before TB diagnosis in whole blood.

17 citations

humanbulk RNA-seq

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