Ananth Prakash

The paper reanalyzes public DIA proteomics datasets to provide a baseline view of human protein expression across tissues and compares it with previous DDA results.

The paper reanalyzes public pig proteomics data to map baseline protein expression across 14 organs and compares it with human orthologs.

This paper performs a meta-analysis of 11 phosphoproteomics datasets to identify phosphorylated sites in Plasmodium falciparum and related species, revealing sequence motifs, conservation patterns, and structural context of phosphosites.

This study analyzes rice phosphoproteomics data to identify phosphosite variations across the rice pan-genome and their functional implications.

The paper reanalyzes 24 public proteomics datasets to assess baseline protein abundance in 31 human organs and integrates the results into the Expression Atlas for combined proteomics and transcriptomics analysis.

The paper reanalyzes proteomics datasets from mouse and rat tissues to compare baseline protein expression across species and organs, finding high correlation among orthologs in brain, kidney, heart, and liver.

The paper introduces a pipeline to re-analyze public DIA proteomics datasets, integrating results into Expression Atlas to enhance data availability and utility.

The paper introduces a method to independently estimate the false localisation rate in phosphoproteomics using decoy amino acids, showing that alanine and leucine provide reliable results.

The paper introduces XRNAX, a method to purify protein-RNA complexes, and shows it captures all RNA biotypes and reveals dynamic changes in the RNA-bound proteome during arsenite-induced stress.