Author

Daniel A. Cruz

University of FloridaORCID 0000-0001-5832-5228Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:imaging· 1 Research Focus:software / tool· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Adam KnappiD· 1 shared Borna MehradiD· 1 shared Elena DimitrovaiD· 1 shared Eunbi Park· 1 shared Iryna HartsockiD· 1 shared Jack ToppeniD· 1 shared Melissa Lambeth KempiD· 1 shared Peter BubenikiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperSystems Biology

Adam KnappORCID

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2 papers

Recent·Most cited

Systems BiologyJournal of The Royal Society InterfacePeer-reviewedJul 1, 2025

Personalizing computational models to construct medical digital twins

Adam Knapp, Daniel A. Cruz, Borna Mehrad, Reinhard Laubenbacher

This paper develops an algorithm to calibrate agent-based computational models to individual patients using data assimilation techniques for personalized medicine.

15 citationstop 1%

humanstatistical model

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Developmental BiologyScientific ReportsPeer-reviewedApr 4, 2025

Topological data analysis of pattern formation of human induced pluripotent stem cell colonies

Iryna Hartsock, Eunbi Park, Jack Toppen…·Daniel A. Cruz

This paper introduces a computational pipeline using topological data analysis to quantify multicellular patterning in human induced pluripotent stem cell colonies, revealing subtle differences in differentiation stages.

5 citations

humanimaging

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