Jinfang Zheng

This paper introduces AMP-SEMiner, an AI framework for discovering antimicrobial peptides from metagenomes, identifying over 1.6 million candidates and validating their antimicrobial activity.

This paper provides a computational protocol for automated CAZyme annotation in microbiome sequencing data using dbCAN, offering publication-quality results and faster local execution.

The paper investigates the role of HbxA in Aspergillus nidulans, showing it regulates over 1,000 genes and affects secondary metabolite production.

AcaFinder identifies Aca genes and their associated acr-aca operons in prokaryotic and phage genomes, revealing new Aca families and operonic associations.

The paper introduces RMalign, a size-independent RNA 3D structural alignment tool, which improves benchmarking performance over existing methods and updates the PRIME RNA-protein modeling approach.

Deep-RBPPred predicts RNA binding proteins across multiple species using deep learning, achieving high accuracy and speed compared to existing methods.