Yanbin Yin

The paper identifies mucinolysomes as multi-enzyme complexes in gut microbiomes, showing their presence across 65 genomes and higher prevalence in farm animals than humans.

CAZyme3D provides a database of 3D structures for CAZymes, enabling structural similarity searches to identify distant homology and classify CAZymes hierarchically.

This paper introduces AMP-SEMiner, an AI framework for discovering antimicrobial peptides from metagenomes, identifying over 1.6 million candidates and validating their antimicrobial activity.

This paper provides a computational protocol for automated CAZyme annotation in microbiome sequencing data using dbCAN, offering publication-quality results and faster local execution.

The paper investigates the role of HbxA in Aspergillus nidulans, showing it regulates over 1,000 genes and affects secondary metabolite production.

AcaFinder identifies Aca genes and their associated acr-aca operons in prokaryotic and phage genomes, revealing new Aca families and operonic associations.

This study assesses the impact of metagenome-assembled genomes (MAGs) on pan-genome analysis, finding that incompleteness causes significant core gene loss and affects functional predictions and phylogenetic accuracy.