Author

Henk M.W. Verheul

Amsterdam University Medical CentersORCID 0000-0001-5981-922XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:proteomics· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alex A. HennemaniD· 1 shared Andre L.A.J. DekkeriD· 1 shared Andrea BertottiiD· 1 shared Barend MonsiD· 1 shared Carolien van AlpheniD· 1 shared Connie R. JiméneziD· 1 shared Cornelis Kees VerhoefiD· 1 shared Daan M. HazelaariD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperSystems Biology

Alex A. HennemanORCID

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3 papers

Recent·Most cited

Bioinformaticsnpj Precision OncologyPeer-reviewedDec 15, 2025

Improved circulating tumor DNA profiling by simultaneous extraction of DNA methylation and copy number information from Methylated DNA Sequencing data (MeD-seq)

Daan M. Hazelaar, Ruben Boers, Joachim Boers…·Saskia M. Wilting

The paper introduces MeD-seq, a method to profile circulating tumor DNA by analyzing DNA methylation and copy number changes, showing its effectiveness in detecting cancer-specific signals in plasma samples.

3 citations

humanDNA methylation

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BioinformaticsbioRxivPreprintMay 18, 2020

TraIT, Translational research IT bridging the valley of death in translational medicine

Jan‐Willem Boiten, Rita Azevedo, Kees van Bochove…·Gerrit A. Meijer

TraIT provides an IT platform for translational research, supporting data management and workflows with training, and has been widely adopted as a demonstrator for Health-RI.

1 citation

database / resource

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Systems BiologyMolecular Systems BiologyPeer-reviewedApr 1, 2019

INKA, an integrative data analysis pipeline for phosphoproteomic inference of active phosphokinases

Robin Beekhof, Carolien van Alphen, Alex A. Henneman…·Connie R. Jiménez

INKA identifies active phosphokinases in cancer by integrating kinase and substrate phosphorylation data from phosphoproteomics.

97 citationstop 3%

humanproteomics

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