Author

Jing Niu

Tsinghua UniversityORCID 0000-0001-6094-6162Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Assay:Hi-C· 1 Organism:human· 1

Frequent Co-Authors

Juntao Tony GaoiD· 2 shared Michael Q. ZhangiD· 2 shared Ahmed Abbas· 1 shared Bin ZhouiD· 1 shared Bingxiang XuiD· 1 shared Danyang WangiD· 1 shared Feifei LiiD· 1 shared Guangxiang ZhuiD· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersGenomics

Juntao Tony GaoORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 7, 2019

Widespread transcriptional responses to the thermal stresses are prewired in human 3D genome

Xiaoli Li, Bingxiang Xu, Xiao Li…·Zhihua Zhang

The paper shows that transcriptional responses to thermal stress in human cells are prewired in the 3D genome, with chromatin and epigenetic settings playing a key role.

7 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsNature CommunicationsPeer-reviewedMay 3, 2019

Integrating Hi-C and FISH data for modeling 3D organizations of chromosomes

Ahmed Abbas, Xuan He, Jing Niu…·Jianyang Zeng

This paper introduces GEM-FISH, a method that integrates Hi-C and FISH data to improve 3D chromosome modeling, showing better accuracy in TADs, compartments, and super-enhancer distributions than Hi-C alone.

68 citations

Hi-Cstatistical model

𝕏 PostBluesky