Author

Xiaoli Li

Beijing Advanced Innovation Center for Food Nutrition and Human Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Bingxiang XuiD· 2 shared Yan Jia· 2 shared Zhihua ZhangiD· 2 shared Beidong LiuiD· 1 shared Danyang WangiD· 1 shared Feifei LiiD· 1 shared Feifei Li· 1 shared Hui Zhang· 1 shared

Activity by Year

2016-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Bingxiang XuORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Widespread transcriptional responses to the thermal stresses are prewired in human 3D genome

Xiaoli Li, Bingxiang Xu, Xiao Li, Danyang Wang, Ziyang An, Yan Jia, Jing Niu, Juntao Tony Gao, Michael Q. Zhang, Feifei Li, Zhihua Zhang

The paper shows that transcriptional responses to thermal stress in human cells are prewired in the 3D genome, with chromatin and epigenetic settings playing a key role.

bioRxiv · Aug 7, 2019 · PreprintGenomics

Mck1 defines a key S-phase checkpoint effector in response to various degrees of replication threats

Xiaoli Li, Xuejiao Jin, Sushma Sharma, Xiaojing Liu, Jiaxin Zhang, Yan-Ling Niu, Jiani Li, Zhen Li, Jingjing Zhang, Qinhong Cao, Wenya Hou, Li‐Lin Du, Beidong Liu, Huiqiang Lou

The paper identifies Mck1 as a key S-phase checkpoint effector that regulates dNTP homeostasis by modulating RNR and HUG1 expression in response to replication threats.

PLoS Genetics · Aug 5, 2019Peer-reviewedMolecular Biology

Characteristic arrangement of nucleosomes is predictive of chromatin interactions at kilobase resolution

Hui Zhang, Feifei Li, Yan Jia, Bingxiang Xu, Yiqun Zhang, Xiaoli Li, Zhihua Zhang

The paper introduces CISD and CISD_loop methods to predict chromatin interactions from MNase-seq and Hi-C data, achieving kilobase resolution with low data requirements.

bioRxiv · Jul 31, 2016Bioinformatics