Author

Ahmed Youssef

Boston UniversityORCID 0000-0001-6100-7503Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Andrew EmiliiD· 2 shared Indranil PauliD· 2 shared Brian RaughtiD· 1 shared Carl A. White· 1 shared Christopher S. CheniD· 1 shared Dante BolzaniD· 1 shared Dima KozakoviD· 1 shared Dzmitry PadhornyiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Andrew EmiliORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 19, 2023

DESP: Demixing Cell State Profiles from Dynamic Bulk Molecular Measurements

Ahmed Youssef, Indranil Paul, Mark E. Crovella, Andrew Emili

DESP resolves cell state contributions to bulk molecular measurements using single-cell data, demonstrating accuracy in reconstructing proteome and transcriptome signatures during epithelial-to-mesenchymal transition.

DOI 10.1101/2023.01.19.524460

humanbulk RNA-seq

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Systems BiologybioRxivPreprintJun 1, 2021

A multi-tiered map of EMT defines major transition points and identifies vulnerabilities

Indranil Paul, Dante Bolzan, Ahmed Youssef…·Andrew Emili

The paper maps EMT transitions through multi-omic profiling, identifies key regulatory factors, and reveals discordance between molecular layers in human mammary epithelial cells.

1 citation

humanbulk RNA-seq

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