Author

Dante Bolzan

La Jolla Institute for ImmunologyORCID 0000-0002-1004-4213Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ahmed YoussefiD· 1 shared Andrew EmiliiD· 1 shared Brian RaughtiD· 1 shared Carl A. White· 1 shared Christopher S. CheniD· 1 shared Dima KozakoviD· 1 shared Dzmitry PadhornyiD· 1 shared Ferhat AyiD· 1 shared

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2021-2025 · peak 1/yr

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10 top collaborators · 36 mutual co-author links

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1 shared paperSystems Biology

Ahmed YoussefORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 1, 2025

Soffritto: a deep-learning model for predicting high-resolution replication timing

Dante Bolzan, Ferhat Ay

Soffritto predicts high-resolution replication timing using two-fraction RT data and other genomic features, achieving accurate 16-fraction RT signals across cell lines.

2 citations

humanmouse

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Systems BiologybioRxivPreprintJun 1, 2021

A multi-tiered map of EMT defines major transition points and identifies vulnerabilities

Indranil Paul, Dante Bolzan, Ahmed Youssef…·Andrew Emili

The paper maps EMT transitions through multi-omic profiling, identifies key regulatory factors, and reveals discordance between molecular layers in human mammary epithelial cells.

1 citation

humanbulk RNA-seq

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