Author

Brendan John Honick

Pittsburgh Supercomputing CenterORCID 0000-0001-6128-9854Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Cell Biology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 4 Assay:bulk RNA-seq· 3 Assay:spatial transcriptomics· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:proteomics· 2

Frequent Co-Authors

Jonathan C. SilversteiniD· 4 shared Philip D. BloodiD· 4 shared Katy BörneriD· 3 shared Andreas BueckleiD· 2 shared Bernard de BonoiD· 2 shared Danial QaurooniiD· 2 shared David BetancuriD· 2 shared Ivan Cao-BergiD· 2 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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4 shared papersBioinformatics

Jonathan C. SilversteinORCID

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4 papers

Recent·Most cited

Cell BiologybioRxivPreprintJun 4, 2026

The HuBMAP Framework for Advancing Data FAIRness

Stephen A. Fisher, Josef Hardi, Richard S. Morgan…·Mark A. Musen

The paper describes the HuBMAP framework for creating FAIR data through standardized metadata reporting across diverse assays and institutions.

1 citation

spatial transcriptomicsbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 4, 2026

SenNet Portal: Build, Optimization and Usage

Katy Börner, Philip D. Blood, Jonathan C. Silverstein…·Bruce W. Herr

The paper introduces the SenNet Portal, a resource for senescent cell data and tools, and discusses its usage and future developments.

4 citations

𝕏 PostBluesky

Scientific Communication & EducationbioRxivPreprintApr 16, 2026

The Common Fund Data Ecosystem (CFDE)

Julie A. Jurgens, Andreas Bueckle, Jeet Kiran Vora…·Casey S. Greene

The paper describes the Common Fund Data Ecosystem (CFDE), which integrates NIH Common Fund data resources to enable discovery, analysis, and collaboration across heterogeneous datasets.

1 citation

database / resource

𝕏 PostBluesky

BioinformaticsNature MethodsPeer-reviewedMar 13, 2025

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

Katy Börner, Philip D. Blood, Jonathan C. Silverstein…·Vilas Menon

This paper describes the construction and usage of the Human Reference Atlas (HRA) v2.0, which integrates multiscale data across 36 organs and provides tools for analysis and visualization.

51 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky