Author

Stephen Thomas Vernon

The University of SydneyORCID 0000-0001-6262-0916Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:metabolomics· 1

Frequent Co-Authors

Gemma Alexandra FigtreeiD· 3 shared Jean Yee Hwa YangiD· 3 shared Stuart M. GrieveiD· 3 shared Andy TraniD· 2 shared Dario StrbenaciD· 2 shared Katharine A. BateiD· 2 shared Albert HenryiD· 1 shared Andy Yu-Der WangiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersBioinformatics

Gemma Alexandra FigtreeORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cell BiologybioRxivPreprintAug 18, 2025

Endothelial Colony-Forming Cell Transcriptomic Profiling in CT-defined Coronary Artery Disease from the BioHEART-CT Study Implicate CCBE1 in Mitochondrial Dysfunction-associated Atherosclerosis

Weiqian Eugene Lee, Sarah L. Cook, Gareth S. D. Purvis…·Gemma Alexandra Figtree

This study identifies CCBE1 as a gene associated with mitochondrial dysfunction in atherosclerosis using transcriptomic analysis of endothelial cells from CAD patients.

1 citation

humanbulk RNA-seq

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BioinformaticsScientific ReportsPeer-reviewedFeb 20, 2024

Construction and optimization of multi-platform precision pathways for precision medicine

Andy Tran, Andy Yu-Der Wang, Jamie Mickaill…·Jean Yee Hwa Yang

The paper develops a framework to construct multi-platform precision diagnostic pathways automatically, optimizing for accuracy and cost-effectiveness in clinical settings.

2 citations

statistical modelbenchmarking

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BioinformaticsNature CommunicationsPeer-reviewedAug 17, 2021

hRUV: Hierarchical approach to removal of unwanted variation for large-scale metabolomics data

Tai-Yun Kim, Owen Tang, Stephen Thomas Vernon…·Jean Yee Hwa Yang

The paper introduces hRUV, a hierarchical method to remove unwanted variation in large-scale metabolomics data, showing improved preservation of biological signals.

56 citations

humanmetabolomics

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