Alice Feurtey

Earl Grey ParTEA annotates transposable elements across multiple genomes, revealing shared and private TE families and improving annotation consistency.

This study identifies genetic and transcriptional responses of Zymoseptoria tritici to host defense simulations, revealing shared and condition-specific adaptations.

The paper identifies a new accessory chromosome in Zymoseptoria tritici and shows it originated through interspecies hybridization with Zymoseptoria ardabiliae.

This study analyzes a large European diversity panel of Zymoseptoria tritici to uncover genetic mechanisms underlying azole fungicide resistance across space and time.

This study investigates how Zymoseptoria tritici responds to temperature shocks using transcriptomics and GWAS, identifying genes and loci involved in thermal adaptation.

The paper improves gene annotation of Zymoseptoria tritici by combining Iso-Seq and RNA-Seq data, resulting in more accurate gene models and new insights into its transcriptional landscape.

The paper investigates thermal adaptation in Zymoseptoria tritici by analyzing a global collection of strains, identifying genes and showing a correlation between climate variables and optimal growth temperatures.

This study identifies evolutionary signatures of host specialization in Zymoseptoria tritici, showing distinct population structures and potential speciation driven by divergence between wild and domesticated host grasses.

This study shows that segmental duplications drive the evolution of accessory regions in Fusarium oxysporum, contributing to virulence evolution in banana pathogens.

The paper traces the origin and reactivation of a transposable element in a fungal wheat pathogen, showing its role in chromosomal rearrangements and loss of genomic control.

The paper analyzes a thousand-genome panel of Zymoseptoria tritici to trace its global spread and identify genetic changes associated with climatic adaptation.

The paper shows that loss of Dim2 DNA methyltransferase in Zymoseptoria tritici reduces mutation rates in repeats and alters evolutionary trajectory by affecting 5mC levels and transposable element dynamics.

The paper examines TE dynamics in Zymoseptoria species, finding recent insertions and varying Repeat-Induced Point mutation signatures across isolates.

The paper compares genome architecture across Zymoseptoria species, finding high conservation of compartmentalization despite genomic variability.