Author

Nitesh Kumar Sharma

Institute of Himalayan Bioresource TechnologyORCID 0000-0001-6379-1426Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Assay:CUT&Tag· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Ravi ShankariD· 3 shared Ashwani KumariD· 2 shared Prakash P. KumariD· 2 shared Sagar GuptaiD· 2 shared Upendra Kumar PradhaniD· 2 shared Ritu RituiD· 1 shared Sagar GuptaiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 16 mutual co-author links

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3 shared papersBioinformatics

Ravi ShankarORCID

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3 papers

Recent·Most cited

BioinformaticsGenomicsPeer-reviewedAug 2, 2022

DeepPlnc: Bi-modal Deep Learning for Highly Accurate Plant lncRNA Discovery

Ritu Ritu, Sagar Gupta, Nitesh Kumar Sharma, Ravi Shankar

DeepPlnc is a deep learning system for plant lncRNA discovery that outperforms existing tools with high accuracy and robustness to sequence ambiguity.

9 citations

plant (other)long-read sequencing

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BioinformaticsiSciencePeer-reviewedOct 30, 2021

RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery

Nitesh Kumar Sharma, Sagar Gupta, Ashwani Kumar…·Ravi Shankar

RBPSpot identifies RBP binding sites using contextual sequence features and a DNN, achieving ~90% accuracy and outperforming existing tools across multiple datasets.

13 citations

humanCUT&Tag

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BioinformaticsPLoS ONEPeer-reviewedOct 12, 2021

miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles

Upendra Kumar Pradhan, Nitesh Kumar Sharma, Prakash P. Kumar…·Ravi Shankar

miRbiom uses Bayesian causal networks of RBP-miRNA interactions to predict miRNA profiles with high accuracy without requiring separate miRNA profiling experiments.

14 citations

humanbulk RNA-seq

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