Author

Ashwani Kumar

Institute of Himalayan Bioresource TechnologyORCID 0000-0002-8966-3569Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Ashwani Kumar3 papers · The University of Texas Southwestern Medical Center

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Assay:CUT&Tag· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1

Frequent Co-Authors

Nitesh Kumar SharmaiD· 2 shared Prakash P. KumariD· 2 shared Ravi ShankariD· 2 shared Upendra Kumar PradhaniD· 2 shared Abdelrahman Hamza AbdelmoneimiD· 1 shared Abhishek SharmaiD· 1 shared Ali Gharip· 1 shared Ankit Rishi GuptaiD· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Nitesh Kumar SharmaORCID

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3 papers

Recent·Most cited

BioinformaticsiSciencePeer-reviewedOct 30, 2021

RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery

Nitesh Kumar Sharma, Sagar Gupta, Ashwani Kumar…·Ravi Shankar

RBPSpot identifies RBP binding sites using contextual sequence features and a DNN, achieving ~90% accuracy and outperforming existing tools across multiple datasets.

13 citations

BioinformaticsPLoS ONEPeer-reviewedOct 12, 2021

miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles

Upendra Kumar Pradhan, Nitesh Kumar Sharma, Prakash P. Kumar…·Ravi Shankar

miRbiom uses Bayesian causal networks of RBP-miRNA interactions to predict miRNA profiles with high accuracy without requiring separate miRNA profiling experiments.

14 citations

humanbulk RNA-seq

BioinformaticsbioRxivPreprintJun 10, 2020

In silico multi-epitope vaccine against covid19 showing effective interaction with HLA-B*15:03

Muniba Faiza, Tariq Abdullah, Jose F. C. Tantalean…·Uma Chaudhary

This paper designs an in silico multi-epitope vaccine against SARS-CoV-2 that interacts with HLA-B*15:03, showing potential for cross-protection against SARS and MERS.

3 citations

humanexperimental assay