Author

Prakash P. Kumar

Indian Agricultural Statistics Research InstituteORCID 0000-0002-0963-1664Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Assay:CUT&Tag· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Ashwani KumariD· 2 shared Nitesh Kumar SharmaiD· 2 shared Ravi ShankariD· 2 shared Upendra Kumar PradhaniD· 2 shared Sagar GuptaiD· 1 shared Sagar GuptaiD· 1 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 14 mutual co-author links

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2 shared papersBioinformatics

Ashwani KumarORCID

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2 papers

Recent·Most cited

BioinformaticsiSciencePeer-reviewedOct 30, 2021

RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery

Nitesh Kumar Sharma, Sagar Gupta, Ashwani Kumar…·Ravi Shankar

RBPSpot identifies RBP binding sites using contextual sequence features and a DNN, achieving ~90% accuracy and outperforming existing tools across multiple datasets.

13 citations

humanCUT&Tag

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BioinformaticsPLoS ONEPeer-reviewedOct 12, 2021

miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles

Upendra Kumar Pradhan, Nitesh Kumar Sharma, Prakash P. Kumar…·Ravi Shankar

miRbiom uses Bayesian causal networks of RBP-miRNA interactions to predict miRNA profiles with high accuracy without requiring separate miRNA profiling experiments.

14 citations

humanbulk RNA-seq

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