Author

Samantha C. Waterworth

University of Wisconsin–MadisonORCID 0000-0001-6436-0142Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Research Focus:database / resource· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:imputation· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Jason C. KwaniD· 3 shared Evan R. ReesiD· 2 shared Siddharth UppaliD· 2 shared Alina Nick· 1 shared Andrew J. LailiD· 1 shared Chase M. ClarkiD· 1 shared Gabriella M. Solomons· 1 shared Heiko VogeliD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersBioinformatics

Jason C. KwanORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicrobiologymSpherePeer-reviewedNov 21, 2024

The unique and enigmatic spirochete symbiont of latrunculid sponges

Samantha C. Waterworth, Gabriella M. Solomons, Jarmo‐Charles Julian Kalinski…·Rosemary Ann Dorrington

This study characterizes spirochete symbionts in latrunculid sponges, finding they are phylogenetically distinct and may provide functional benefits to their host.

3 citations

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsThe ISME JournalPeer-reviewedJan 1, 2024

Repeated horizontal acquisition of lagriamide-producing symbionts in Lagriinae beetles

Siddharth Uppal, Samantha C. Waterworth, Alina Nick…·Jason C. Kwan

The paper identifies multiple independent acquisitions of lagriamide-producing Burkholderia symbionts in Lagriinae beetles, showing genome erosion and lack of host-symbiont co-diversification.

6 citations

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 1, 2023

Autometa 2: A versatile tool for recovering genomes from highly-complex metagenomic communities

Evan R. Rees, Siddharth Uppal, Chase M. Clark…·Jason C. Kwan

Autometa 2 improves genome recovery from metagenomic data by simplifying installation, adding a GUI, and enhancing performance through parameter optimization.

3 citations

metagenomicsexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 25, 2023

Automappa: An interactive interface for metagenome-derived genome bins

Evan R. Rees, Samantha C. Waterworth, Shaurya Chanana, Jason C. Kwan

Automappa refines metagenome-derived genome bins by integrating annotations and improving MAG quality through interactive exploration.

1 citation

metagenomicsexperimental assay

𝕏 PostBluesky