Jason C. Kwan

The paper examines how soil bacterial communities recover after prescribed burns by analyzing genome conservation and functional equivalence across time and space.

SocialGene creates and leverages knowledge graphs for multi-omics data analysis in genomics and drug discovery, enabling integration and exploration of diverse datasets.

The paper identifies multiple independent acquisitions of lagriamide-producing Burkholderia symbionts in Lagriinae beetles, showing genome erosion and lack of host-symbiont co-diversification.

Autometa 2 improves genome recovery from metagenomic data by simplifying installation, adding a GUI, and enhancing performance through parameter optimization.

Automappa refines metagenome-derived genome bins by integrating annotations and improving MAG quality through interactive exploration.

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

Autometa improves microbial genome binning in metagenomes by automating clustering and taxonomic partitioning, outperforming existing methods in complex datasets.