Author

Chi-Yu Lee

Howard Hughes Medical InstituteORCID 0000-0001-6440-3050Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:mouse· 2 Research Focus:cell type annotation· 1 Organism:Drosophila· 1 Assay:imaging· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Karolina FarrelliD· 2 shared Abhi AggarwaliD· 1 shared Alina Gubanova· 1 shared Allan M. WongiD· 1 shared Allison M. Ahrens· 1 shared Amalia PapanikolaouiD· 1 shared Aman B. SaleemiD· 1 shared Arthur TsangiD· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersNeuroscience

Karolina FarrellORCID

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3 papers

Recent·Most cited

NeurosciencebioRxivPreprintSep 14, 2024

Combined transcriptomic, connectivity, and activity profiling of the medial amygdala using highly amplified multiplexed in situ hybridization (hamFISH)

Mathew D. Edwards, Ziwei Yin, Risa Sueda…·Yoh Isogai

The paper introduces hamFISH, a method for multiplexed in situ hybridization to profile gene expression, connectivity, and activity in the medial amygdala of mice, identifying 16 inhibitory and 10 excitatory neuron types.

DOI 10.1101/2024.09.14.613026

mousespatial transcriptomics

𝕏 PostBluesky

NeuroscienceNature MethodsPeer-reviewedMay 25, 2020

jYCaMP: An optimized calcium indicator for two-photon imaging at fiber laser wavelengths

Manuel Alexander Mohr, Daniel Bushey, Abhi Aggarwal…·Kaspar Podgorski

The paper introduces jYCaMP1, a calcium indicator optimized for two-photon imaging at wavelengths above 1000 nm, showing improved performance in mice and flies.

62 citationstop 3%

mouseDrosophila

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NeurosciencebioRxivPreprintMar 9, 2020

BonVision - an open-source software to create and control visual environments

Gonçalo Lopes, Karolina Farrell, Edward A. B. Horrocks…·Aman B. Saleem

BonVision provides an open-source tool for creating and controlling visual environments, enabling closed-loop experiments with real-time interaction and hardware integration.

7 citations

experimental assaysoftware / tool

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