Author

Shona Chandra

The University of SydneyORCID 0000-0003-2092-8917Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:biophysical modeling· 1 Organism:E. coli· 1 Approach:statistical model· 1 Organism:virus· 1

Frequent Co-Authors

Carl J. E. SusteriD· 2 shared Jessica E. AgiusiD· 2 shared Kerri BasileiD· 2 shared Qinning WangiD· 2 shared Vitali SintchenkoiD· 2 shared Winkie FongiD· 2 shared Alexander P. DrewiD· 1 shared Basel Suliman· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

Carl J. E. SusterORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

STECode: an automated virulence barcode generator to aid clinical and public health risk assessment of Shiga toxin-producing Escherichia coli

Eby M. Sim, Winkie Fong, Carl J. E. Suster, Jessica E. Agius, Shona Chandra, Basel Suliman, Qinning Wang, Christine Ngo, Connor Finemore, Sharon C.‐A. Chen, Kerri Basile, Vitali Sintchenko

STECode automates virulence barcode generation for Shiga toxin-producing E. coli to assess pathogenic potential from sequencing data.

bioRxiv · May 7, 2024 · PreprintMicrobiology

A laboratory framework for ongoing optimisation of amplification based genomic surveillance programs

Connie Lam, Jessica C. Johnson-Mackinnon, Kerri Basile, Winkie Fong, Carl J. E. Suster, Mailie L. Gall, Jessica E. Agius, Shona Chandra, Jenny L. Draper, Elena M. Martinez, Alexander P. Drew, Qinning Wang, Sharon Chia-Ju Chen, Jen Kok, Dominic Edmund Dwyer, , Rebecca J. Rockett

This study develops a framework to optimize sequencing efficiency for genomic surveillance by adjusting primer pooling and sets based on evolving viral populations.

bioRxiv · Jul 17, 2023 · PreprintGenomics