Author

Ragıp Soner Silme

Istanbul UniversityORCID 0000-0001-6547-3747Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Organism:bacteria (other)· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Ömür BaysaliD· 5 shared Ahmet CaniD· 3 shared Ümran ÇapariD· 2 shared Abdul-Nasir Abdul-BaasitiD· 1 shared Agit ÇetinkayaiD· 1 shared Ahmet KorkutiD· 1 shared Barış Ethem SüzekiD· 1 shared Burak SeneriD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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5 shared papersMicrobiology

Ömür BaysalORCID

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5 papers

Recent·Most cited

MicrobiologybioRxivPreprintFeb 8, 2026

Integrative Genomic and Metabolomic Analysis of Terribacillus aidigensis KB25 Highlights Its Antifungal Activity against Phytophthora infestans and Adaptive Responses to Salt Stress

Gözde Koşarsoy Ağçeli, Ömür Baysal, Ragıp Soner Silme, Ümran Çapar

DOI 10.64898/2026.02.07.704535

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

Molecular BiologyArabian Journal for Science and EngineeringPeer-reviewedSep 13, 2025

The Specific Genetic Markers to Diagnose Xanthomonads Infecting Pepper and Tomato Plants

Ahmet Can, Abdul-Nasir Abdul-Baasit, İlayda Nur Belen…·Ömür Baysal

The paper develops a marker system using microsatellite and RFLP methods to distinguish Xanthomonas species infecting pepper and tomato plants.

DOI 10.1007/s13369-025-10603-1

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 28, 2024

Pesticide degradation capacity of a novel strain belonging to Serratia sarumanii (GBS19) with its genomic profile

Gülperi Alatassi, Ömür Baysal, Ragıp Soner Silme…·Ahmet Can

This study identifies a novel Serratia sarumanii strain (GBS19) capable of degrading several pesticides, with genomic analysis confirming its degradation capacity and potential for bioremediation.

DOI 10.1101/2024.11.28.625876

whole-genome sequencingstatistical model

𝕏 PostBluesky

MicrobiologyCurrent MicrobiologyPeer-reviewedOct 14, 2024

Exploring the genome-wide expression level of the bacterial strain belonging to Bacillus safensis (MM19) against Phomopsis viticola

Ragıp Soner Silme, Ömür Baysal, Ahmet Can…·Agit Çetinkaya

The paper investigates the genome-wide gene expression of Bacillus safensis strain MM19 against Phomopsis viticola, identifying thiamine biosynthesis and virulence gene expression changes.

1 citation

bacteria (other)bulk RNA-seq

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BioinformaticsbioRxivPreprintSep 9, 2021

Phomoarcherin B as a novel HIV-1 reverse transcriptase RNase H activity inhibitor: conclusions from comprehensive computational analysis

Naeem Abdul Ghafoor, Ömür Baysal, Barış Ethem Süzek, Ragıp Soner Silme

This study identifies Phomoarcherin B as a potential inhibitor of HIV-1 reverse transcriptase RNase H activity through computational analysis of genomic data and virtual screening.

1 citation

humanstatistical model

𝕏 PostBluesky