Author

Bogumił Kaczkowski

RIKENORCID 0000-0001-6554-5608Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2

Frequent Co-Authors

Aki MinodaiD· 2 shared Erik ArneriD· 2 shared Lusy HandokoiD· 2 shared Marina LizioiD· 2 shared Aditi KanhereiD· 1 shared Akira HasegawaiD· 1 shared Albin SandeliniD· 1 shared Alessandro BonettiiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Aki MinodaORCID

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3 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedJan 11, 2023

xcore: an R package for inference of gene expression regulators

Maciej Migdał, Cecilia Lanny Winata, Takahiro Arakawa…·Bogumił Kaczkowski

xcore is an R package that models transcription factor activity using ChIP-seq signatures and gene expression data, demonstrating improved biological relevance in case studies.

1 citation

ChIP-seqstatistical model

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GenomicsGenome ResearchPeer-reviewedJul 1, 2020

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Jordan A. Ramilowski, Chi Wai Yip, Saumya Agrawal…·Chinatsu Yamamoto

The paper functionally annotates human long non-coding RNAs by systematically knocking down 285 lncRNAs and analyzing molecular phenotypes using CAGE sequencing.

178 citations

humanbulk RNA-seq

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Molecular BiologyEpigeneticsPeer-reviewedApr 3, 2018

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states

Lusy Handoko, Bogumił Kaczkowski, Chung-Chau Hon…·Takashi Umehara

The paper investigates how JQ1 affects BRD2-dependent and independent transcription regulation without altering H4-hyperacetylated chromatin states in NSCLC cells.

37 citations

humanChIP-seq

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