Author

Jesse A. Goodrich

University of Southern CaliforniaORCID 0000-0001-6615-0472Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Amir GoldkorniD· 1 shared Anthony A. FodoriD· 1 shared Bryan QuemeiD· 1 shared Daisy Fry BrumitiD· 1 shared Daniel BstehiD· 1 shared Darryl ShibataiD· 1 shared David V. ContiiD· 1 shared Huaiyu MiiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperBioinformatics

Amir GoldkornORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 20, 2026

Circulating Microbial DNA as a Potential Cancer Biomarker: Technical Challenges and Controlled Evaluation

Daisy Fry Brumit, Daniel Bsteh, Shan Sun…·Anthony A. Fodor

This paper evaluates circulating microbial DNA as a cancer biomarker, finding that observed patterns are largely artifacts of sequencing and analysis methods rather than biological signals.

DOI 10.64898/2026.08.17.745053

humanmetagenomics

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GenomicsbioRxivPreprintJun 17, 2026

Annotation-Based Gene-Peak Links Improve Regulatory Network Prediction of Gene Expression in Human Kidney Multi-Omics

Xinran Wang, Kimberly D. Siegmund, Jesse A. Goodrich…·Kelly Street

This paper introduces an annotation-based gene-peak linkage method that improves gene expression prediction from chromatin accessibility in human kidney multi-omics data.

DOI 10.64898/2026.06.12.731741

humanATAC-seq

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BioinformaticsBioinformaticsPeer-reviewedJun 1, 2026

Praxis-BGM: Clustering of Omics Data Using Semi-Supervised Transfer Learning for Gaussian Mixture Models via Natural-Gradient Variational Inference

Qiran Jia, Jesse A. Goodrich, David V. Conti

DOI 10.1093/bioinformatics/btag395

bulk RNA-seqscRNA-seq

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