Author

Joseph Aloysius Ludwig

The University of Texas MD Anderson Cancer CenterORCID 0000-0001-6631-8554Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alexander J. LazariD· 2 shared Danh D. TruongiD· 2 shared Davis R IngramiD· 2 shared Khalida WaniiD· 2 shared Alysha SimmonsiD· 1 shared Bryan J. VentersiD· 1 shared Carolina P. LiniD· 1 shared Cheryl C SzanyiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Alexander J. LazarORCID

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2 papers

Recent·Most cited

GenomicsCommunications BiologyPeer-reviewedOct 1, 2026

EWS::WT1 Isoform-Dependent Regulation of Neogenes in Desmoplastic Small Round Cell Tumors

Danh D. Truong, Justin W. Magrath, Kevin A. Murgas…·Joseph Aloysius Ludwig

This study identifies DSRCT-specific neogenes regulated by the EWS::WT1 fusion protein and shows their potential as biomarkers and therapeutic targets in desmoplastic small round cell tumors.

2 citationstop 2%

humanbulk RNA-seq

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Cancer BiologybioRxivPreprintMar 25, 2026

Spatially-resolved single cell atlas of liposarcoma reveals lineage hierarchies, immune niches, and regulatory circuits

Ryan A. Denu, Veena Kochat, Zhao Zheng…·Kunal Rai

This study uses single-nucleus multiome sequencing and spatial transcriptomics to analyze liposarcoma subtypes, revealing distinct cellular states, immune features, and gene regulatory circuits.

1 citation

humanscRNA-seq

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