Author

Aneequa Sundus

Indiana UniversityORCID 0000-0001-6833-2341Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Scientific Communication & Education· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:software / tool· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Paul MackliniD· 3 shared Randy W. HeilandiD· 3 shared Elmar BucheriD· 2 shared Furkan KurtogluiD· 2 shared Heber Lima da RochaiD· 2 shared A. BertiniD· 1 shared André ForjaziD· 1 shared Andrew D. RaddatziD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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3 shared papersBioinformatics

Paul MacklinORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 18, 2025

PhysiGym: bridging the gap between the Gymnasium reinforcement learning application interface and the PhysiCell agent-based model software

A. Bertin, Elmar Bucher, Owen OG Griere…·Véra Pancaldi

PhysiGym integrates PhysiCell with Gymnasium to enable reinforcement learning control of in silico biological processes, demonstrating tumor elimination in a case study.

1 citation

deep learningexperimental assay

𝕏 PostBluesky

Systems BiologyCellPeer-reviewedJul 26, 2025

Digitize your Biology! Modeling multicellular systems through interpretable cell behavior

Jeanette Johnson, Daniel R. Bergman, Heber Lima da Rocha…·Paul Macklin

The paper introduces a framework for mathematical modeling of multicellular systems using interpretable cell behavior rules derived from biological knowledge and multi-omics data.

67 citationstop 1%

statistical modelsoftware / tool

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Scientific Communication & EducationbioRxivPreprintJun 24, 2022

PhysiCell training apps: Cloud hosted open-source apps to learn cell-based simulation software

Aneequa Sundus, Furkan Kurtoglu, Kali Konstantinopoulos…·Paul Macklin

The paper introduces cloud-hosted open-source tools to help researchers learn cell-based simulation software through modular exploration of key components.

2 citations

software / tool

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