Author

Furkan Kurtoglu

Indiana University BloomingtonORCID 0000-0003-4547-1220Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Systems Biology· 2 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:software / tool· 3 Approach:experimental assay· 1 Organism:human· 1 Approach:simulation· 1 Approach:statistical model· 1 Organism:virus· 1

Frequent Co-Authors

Paul MackliniD· 3 shared Randy W. HeilandiD· 3 shared Aneequa SundusiD· 2 shared Michael GetziD· 2 shared Yafei WangiD· 2 shared Aarthi NarayananiD· 1 shared Adrianne L. JenneriD· 1 shared Ali Sinan SaglamiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersSystems Biology

Paul MacklinORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Systems BiologyCellPeer-reviewedJul 26, 2025

Digitize your Biology! Modeling multicellular systems through interpretable cell behavior

Jeanette Johnson, Daniel R. Bergman, Heber Lima da Rocha…·Paul Macklin

The paper introduces a framework for mathematical modeling of multicellular systems using interpretable cell behavior rules derived from biological knowledge and multi-omics data.

67 citationstop 1%

statistical modelsoftware / tool

𝕏 PostBluesky

Scientific Communication & EducationbioRxivPreprintJun 24, 2022

PhysiCell training apps: Cloud hosted open-source apps to learn cell-based simulation software

Aneequa Sundus, Furkan Kurtoglu, Kali Konstantinopoulos…·Paul Macklin

The paper introduces cloud-hosted open-source tools to help researchers learn cell-based simulation software through modular exploration of key components.

2 citations

software / tool

𝕏 PostBluesky

Systems BiologybioRxivPreprintApr 2, 2020

✦ In-depth digest

Iterative community-driven development of a SARS-CoV-2 tissue simulator

Michael Getz, Yafei Wang, Gary C. An…·Paul Macklin

Open-source agent-based PhysiCell model of SARS-CoV-2 infection in lung epithelium; version 5 clears virus in about 6 days in simulation, and delayed T cell arrival increases epithelial loss.

61 citations

virushuman

𝕏 PostBluesky