Gabrielle Deschamps-Francoeur

A ribosomal pseudouridine drives an oncogenic translation program

The paper shows that SNORA81-guided pseudouridylation at a specific 28S rRNA site influences selective translation and ovarian cancer cell proliferation.

snoFlake: A network model for snoRNA-RBP complexes reveals SNORD22 as a U5 snRNP-associated splicing regulator

snoFlake identifies snoRNA-RBP complexes and reveals SNORD22 as a splicing regulator by interacting with U5 snRNP components.

Comparative profiling of SARS-CoV-2 variant infections reveals diverse impacts on host cell RNA and RNA binding protein distribution and regulation

This study compares the impact of SARS-CoV-2 variants on host cell RNA and RNA binding protein distribution, finding Omicron causes less disruption and maintains higher expression of translation factors.

The snoGloBe interaction predictor reveals a broad spectrum of C/D snoRNA RNA targets

The paper introduces snoGloBe, a predictor of C/D snoRNA interactions that identifies both known and novel RNA targets, including viral RNAs, and shows their regulatory roles.

CoCo: RNA-seq Read Assignment Correction for Nested Genes and Multimapped Reads

CoCo improves RNA-seq read assignment by correcting misassignments for nested and multimapped reads, increasing retained reads and improving abundance estimates.