Author

Michael S. Jackson

Newcastle UniversityORCID 0000-0001-7179-1354Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Mauro Santibanez‐KorefiD· 3 shared John BurniD· 2 shared Osagie G. IzuoguiD· 2 shared Richard GalloniD· 2 shared Alessia BuratiniD· 1 shared Anca OniscuiD· 1 shared Ángel AlonsoiD· 1 shared Chia-Ying CheniD· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Mauro Santibanez‐KorefORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintJul 18, 2023

The influence of marker number and sequencing depth on the ability to identify mismatch repair deficient tumours.

Joseph Law, Richard Gallon, Ethan Teare…·Mauro Santibanez‐Koref

The paper investigates how sequencing depth and marker number affect detecting mismatch repair deficiency in colorectal tumors using artificial neural networks.

DOI 10.1101/2023.07.18.546679

humanwhole-exome sequencing

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GenomicsNature MethodsPeer-reviewedJul 13, 2023

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Marieke Vromman, Jasper Anckaert, Stefania Bortoluzzi…·Pieter‐Jan Volders

The paper benchmarks 16 circRNA detection tools across three human cell types, finding large differences in sensitivity but consistent precision, and recommends tool combinations for improved detection.

111 citationstop 1%

humanbulk RNA-seq

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GenomicsPLoS ONEPeer-reviewedAug 29, 2018

A novel panel of short mononucleotide repeats linked to informative polymorphisms enabling effective high volume low cost discrimination between mismatch repair deficient and proficient tumours

Lisa Redford, Ghanim Alhilal, Stephanie J. Needham…·John Burn

The paper introduces a panel of short mononucleotide repeats for MSI testing, showing high concordance with traditional methods and potential for scalable, cost-effective tumor classification.

20 citations

DNA methylationstatistical model

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