Author

Xiaoyi Cao

University of California San DiegoORCID 0000-0001-7222-5450Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Assay:DNA methylation· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Sheng ZhongiD· 3 shared Jia LuiD· 2 shared Alvin Zheng· 1 shared Qiuyang WuiD· 1 shared Zhangming YaniD· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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3 shared papersBioinformatics

Sheng ZhongORCID

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3 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedMay 13, 2019

EpiAlignment: alignment with both DNA sequence and epigenomic data

Jia Lu, Xiaoyi Cao, Sheng Zhong

EpiAlignment aligns genomic regions using DNA sequence and epigenomic data from two species, providing semi-global alignments based on combined sequence and epigenome similarity.

6 citations

humanmouse

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedJul 17, 2018

GIVE: toward portable genome browsers for personal websites

Xiaoyi Cao, Zhangming Yan, Qiuyang Wu…·Sheng Zhong

GIVE provides a library for creating personalized genome browsers on personal websites without needing system administration.

18 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 2, 2018

Development of a joint evolutionary model for the genome and the epigenome

Jia Lu, Xiaoyi Cao, Sheng Zhong

The paper develops a joint evolutionary model for genome and epigenome data to infer dependencies between sequence mutations and epigenomic variations across species.

DOI 10.1101/293076

humanrat

𝕏 PostBluesky