Author

Elisabetta Ferretti

Sapienza University of RomeORCID 0000-0001-7265-6429Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell-cell communication· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alessia CovreiD· 1 shared Anastasiya BoltengageniD· 1 shared Andrea AnichiniiD· 1 shared Anna Maria Di GiacomoiD· 1 shared Antonio De FalcoiD· 1 shared Benjamin CurralliD· 1 shared Daniel BilbaoiD· 1 shared Daniel León-PeriñániD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Alessia CovreORCID

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3 papers

Recent·Most cited

GenomicsScience AdvancesPeer-reviewedAug 7, 2026

Transposable Elements and Homotypic Niches Drive Immune Dynamics and Resistance in Melanoma Epigenetic-based immunotherapy

Erika Ciervo, Francesco Ceccarelli, Anna Maria Di Giacomo…·Michele Ceccarelli

This study identifies how epigenetic changes and spatial clustering influence immune dynamics and therapy resistance in melanoma through single-cell and spatial transcriptomics analyses.

DOI 10.1126/sciadv.aed1318

humanscRNA-seq

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Cell BiologybioRxivPreprintFeb 20, 2026

ERK activity as a key player in determining cardiac cell fate choices

Karin Farkas, Elisabetta Ferretti

The paper shows that ERK activity influences cardiac cell fate by directing differentiation towards JCF and SHF markers over FHF-like cardiomyocytes in an in vitro system.

DOI 10.64898/2026.02.18.706664

experimental assaydevelopment & morphogenesis

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Systems BiologyCellPeer-reviewedJun 24, 2024

Open-ST: High-resolution spatial transcriptomics in 3D

Marie Schott, Daniel León-Periñán, Elena Splendiani…·Nikolaus Rajewsky

Open-ST provides a high-resolution, 3D spatial transcriptomics method to study tissue molecular organization, revealing spatially contiguous structures and biomarkers in tumors and lymph nodes.

236 citationstop 1%

mousespatial transcriptomics

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