Ellina Trofimova

This paper introduces nine oligonucleotides and a Python tool for in silico and in vitro typing of E. coli LPS outer core structures, revealing hybrid types and associations with pathogenicity and phylogeny.

This study identifies and characterizes six new phages targeting uropathogenic Escherichia coli, showing host range correlation with tail fiber proteins and improved efficacy in mixed infections.

This paper introduces CORPSE and iCORPSE methods to eliminate and create bacterial promoters within coding sequences using codon constraints.