BioinformaticsbioRxivPreprint
Evaluating Reference-Independent Pipelines for the Detection of Spreading Organisms in Metagenomic Datasets
Nikolay Popov, Vera Panova, Maria Molchanova…·Alexander I. Manolov
This study evaluates four reference-independent pipelines for detecting spreading organisms in metagenomic datasets, finding the coverage-based method most reliable for sensitive pathogen discovery.
DOI 10.64898/2026.05.03.722517