Author

David J. Bass

Johns Hopkins UniversityORCID 0000-0001-7414-2747Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:chromatin & epigenetic regulation· 2 Organism:Drosophila· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alan O. BerglandiD· 2 shared Joaquin C. B. NuneziD· 2 shared Aakrosh RataniD· 1 shared Alejandro Sánchez‐GraciaiD· 1 shared Aleksandra PatenkovićiD· 1 shared Amanda Glaser‐SchmittiD· 1 shared Antonio BarbadillaiD· 1 shared Antonio J. Buendía-Ruíz· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersEvolutionary Biology

Alan O. BerglandORCID

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintSep 12, 2026

Large-scale analysis of transcript data reveals thousands of recursive splicing events in human introns

David J. Bass, Steven L. Salzberg

The paper identifies thousands of recursive splicing events in human introns using a novel bioinformatics pipeline applied to RNA-seq data from human brain gene expression studies.

DOI 10.64898/2026.09.10.750672

humanbulk RNA-seq

𝕏 PostBluesky

Evolutionary BiologyMolecular Biology and EvolutionPeer-reviewedJul 30, 2025

Footprints of worldwide adaptation in structured populations of D. melanogaster through the expanded DEST 2.0 genomic resource

Joaquin C. B. Nunez, Marta Coronado‐Zamora, Mathieu Gautier…·Alan O. Bergland

The paper uses DEST 2.0 to analyze genetic variation in D. melanogaster across continents and time, identifying adaptation patterns and stable spatial genetic structures.

20 citationstop 1%

Drosophilawhole-genome sequencing

𝕏 PostBluesky

Evolutionary BiologyMolecular EcologyPeer-reviewedDec 24, 2024

Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species

Connor S. Murray, Madison Karram, David J. Bass…·Alan O. Bergland

This study examines shared polymorphisms in Daphnia species, finding that balancing selection and convergent evolution explain their distribution, with functional effects on behavior and fitness.

5 citations

Drosophilawhole-genome sequencing

𝕏 PostBluesky