Shulei Wang

The paper integrates the assembly of 21 macromolecular complexes into a whole-cell kinetic model of JCVI-syn3A, improving efficiency and consistency with experimental data.

COTree is a statistical framework that analyzes multi-omic simulation trajectories to identify cellular progression patterns and key driver species in a whole-cell model.

This paper introduces MetaDICT, a method for integrating microbiome data that reduces batch effects and preserves biological variation, improving analysis of microbial interactions and outcome prediction.

RSim is a reference-based normalization method for microbiome data that reduces false discoveries and improves detection power by addressing zero counts without additional assumptions.

The paper introduces a new differential abundance test, MsRDB, for microbial compositional data that improves detection power and robustness to compositional effects and experimental bias.