Author

Sarah M. Ramirez-Busby

San Diego State UniversityORCID 0000-0001-7455-1903Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Faramarz ValafariD· 3 shared Samuel J. ModliniD· 2 shared Afif ElghraouiiD· 1 shared Calvin Kim· 1 shared Cassidy RobinholdiD· 1 shared Christopher MorrisseyiD· 1 shared Derek Conkle-GutierreziD· 1 shared Jim WerngreniD· 1 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersBioinformatics

Faramarz ValafarORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintNov 23, 2021

Rare alternative second line injectable drug resistance markers identified by gene-wise genome wide association in M. tuberculosis with unexplained resistance

Derek Conkle-Gutierrez, Calvin Kim, Sarah M. Ramirez-Busby…·Faramarz Valafar

The paper identifies rare alternative resistance markers in M. tuberculosis using gene-wise genome-wide association, uncovering novel associations with second-line injectable drug resistance.

1 citation

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedJan 27, 2021

Exact mapping of Illumina blind spots in the Mycobacterium tuberculosis genome reveals platform-wide and workflow-specific biases

Samuel J. Modlin, Cassidy Robinhold, Christopher Morrissey…·Faramarz Valafar

The paper identifies Illumina sequencing biases in M. tuberculosis genomes across seven workflows, revealing blind spots and proposing strategies to mitigate them.

43 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 2, 2018

PBHoover and CigarRoller: a method for confident haploid variant calling on Pacific Biosciences data and its application to heterogeneous population analysis

Sarah M. Ramirez-Busby, Afif Elghraoui, Yeon Bin Kim…·Faramarz Valafar

PBHoover and CigarRoller improve haploid variant calling on Pacific Biosciences data, enabling sensitive detection of subpopulations in clinical isolates.

5 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky