Karine Labadie

The paper investigates gene flow and selection during the domestication of yellow mealworms, finding that adaptive gene flow contributes to adaptation to captivity rather than directly shaping production traits.

The paper generates a chromosome-scale genome assembly for an Australian finger lime and uses resequencing to catalog genetic diversity in Oceanian citrus, revealing population structure and hybridization patterns.

The paper reports the genome of Paramecium aurelia, revealing tiny germline chromosomes with an exceptionally high recombination rate and a new class of Helitrons at their ends.

This study assesses the microbial biosynthetic potential of reef-building corals using genome-resolved metagenomics, revealing host-specific microbiomes with high biotechnological value.

The paper identifies organohalogen metabolites as biomarkers for the viral shunt in coccolithophore blooms, showing their global formation and environmental stability.

The paper constructs a citrus super-pangenome from four ancestral species, revealing evolutionary patterns and genetic diversity through gene annotation, resequencing, and PAV analysis.

The paper presents the chromosome-level genome assembly of Androsace saussurei, a plant adapted to extreme alpine environments.

The paper investigates whether dosage compensation and meiotic sex chromosome inactivation persist in parthenogenetic stick insects with relaxed selection, finding both mechanisms are conserved despite the absence of male selection.

This study investigates the evolutionary history and functional specialization of miRNA genes in Arabidopsis halleri and A. lyrata, showing rapid birth-and-death dynamics and integration into core biological processes.

This study examines dosage compensation and meiotic sex chromosome inactivation in stick insects, finding that X chromosome expression is dynamically regulated in male tissues during development.

The paper assesses heat tolerance in Brassica species by evaluating germination responses across diverse populations from multiple countries.

The paper analyzes global ocean data to show that physical and biological patchiness are decoupled, using variance slope to quantify spatial patterns.

The paper presents the chromosome-level genome assembly of Arca noae, a Mediterranean bivalve, providing evolutionary insights and genomic resources for studying environmental adaptation.

This study sequences the giant Y chromosome of Silene latifolia and reveals its structure, function, and evolutionary history.

The paper presents the genome of Pinctada radiata, a Lessepsian migrant, providing insights into its genetic adaptations to environmental changes and supporting conservation efforts.

The paper analyzes centromere structure and function in stick insects, revealing a functionally monocentric system with holocentric-like features and chromosome-specific centromeres.

The paper presents genome sequences of four Ixodes species, revealing gene family amplifications and evolutionary patterns in ticks.

This study investigates cyanate lyase function in Pelagomonas calceolata under different nutrient conditions, finding it reduces intracellular cyanate toxicity rather than metabolizing extracellular cyanate.

The paper assembles polyploid nematode genomes using long-read sequencing and identifies novel telomeric repeats that replace the conserved (TTAGGC)n sequence.

This study constructs the first pan-genome of Theobroma cacao using 216 accessions, revealing 30,489 pan-genes and identifying gene loss and domestication impacts on Criollo genetic group.

The paper reports the chromosome-scale genome of Pelagomonas calceolata, revealing adaptations to iron-poor environments and its potential expansion under climate change.

The paper reports higher gene counts in two coral genomes due to tandem duplications, suggesting a role in immune system and disease resistance.

This paper reports a telomere-to-telomere chromosome-scale assembly of the banana genome using Oxford Nanopore long-read sequencing.

The paper investigates the evolutionary origin of Internal Eliminated Sequences (IESs) in Paramecium genomes, showing transposable elements drive their proliferation and diversification.

The paper identifies male-specific nervous ganglia and LDPGs in Oithona nana, linking them to proteolysis and male-specific physiology.

The paper shows symbiotic bracovirus genes have spread to all chromosomes of parasitoid wasps and are stably maintained, with synchronized expression and no immune response.

The paper investigates population-scale allele-specific expression (psASE) in Oithona similis using metagenomic and metatranscriptomic data, finding that psASE is influenced by population genomic differentiation and linked to natural selection.

The paper investigates sexual dimorphism in Oithona nana by analyzing transcriptomic and protein-protein interaction data, finding male-specific enrichment in LNR domain proteins and pathways related to proteolysis and neurogenesis.

The paper develops a sequence-based physical map of the pea genome using WGP technology, resulting in a robust map with 13,040 contigs and 1.11 million unique WGP tags.