Anthony Bretaudeau

This study identifies a viral gene, U16, essential for genome replication of an ichnovirus in ichneumonid wasps, showing its role in DNA amplification and virion production.

The paper presents genome sequences of four Ixodes species, revealing gene family amplifications and evolutionary patterns in ticks.

The paper introduces Galaxy Training Network (GTN) as a framework for creating and sharing FAIR training materials for data analysis, with recent improvements to support educators and expand its use in various learning environments.

TIaaS provides scalable infrastructure for efficient bioinformatics training, enabling remote and in-person classes with minimal delays and administrative overhead.

The paper sequenced and analyzed the S. littoralis genome to investigate the expansion mechanisms of gustatory receptors in polyphagous noctuidae, identifying transposable elements and positive selection as potential drivers.

Metage2Metabo identifies keystone species in large microbiotas by analyzing metabolic networks and complementarity.

The paper presents genome assemblies and analysis of two aphid parasitoid wasps, identifying AT-richness and gene family expansions linked to host interactions and symbiosis.

The paper shows symbiotic bracovirus genes have spread to all chromosomes of parasitoid wasps and are stably maintained, with synchronized expression and no immune response.

The paper sequenced two ichneumonid wasp genomes to reveal distinct genomic architectures of endogenous ichnoviruses compared to bracoviruses.

This study identifies divergent selection as a sufficient cause for whole genome differentiation in Spodoptera frugiperda without requiring physical linkage among differentiating loci.

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

The paper presents a community-driven framework for interactive data analytics training in life sciences, enabling researchers to learn through web-based computation without software installation.

This study shows that the green peach aphid uses rapid transcriptional changes of duplicated genes to colonize diverse host plants without genetic specialization.