Author

Lisa-Marie Barf

Friedrich Schiller University JenaORCID 0000-0001-7535-2690Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:biophysical modeling· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

Kevin LamkiewicziD· 2 shared Konrad SachseiD· 2 shared Martin HölzeriD· 2 shared Andreas HejnoliD· 1 shared Carsten SachseiD· 1 shared Fabien VorimoreiD· 1 shared Heiko StarkiD· 1 shared Karine LaroucauiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Kevin LamkiewiczORCID

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4 papers

Recent·Most cited

Evolutionary BiologyMolecular Biology and EvolutionPeer-reviewedApr 13, 2026

Multiple losses of ecdysone receptor genes in nematodes: an alternative evolutionary scenario of molting regulation

Shumpei Yamakawa, Lisa-Marie Barf, Andreas Hejnol

1 citation

statistical modeldevelopment & morphogenesis

𝕏 PostBluesky

BiochemistrybioRxivPreprintApr 22, 2025

Proteomic study for the prediction of μCT imaging with iodine

Valentin Wesp, Lisa-Marie Barf, Heiko Stark

The paper identifies proteins and amino acid patterns associated with iodine binding in human tissues to improve μCT imaging contrast.

DOI 10.1101/2025.04.22.649994

humanproteomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 5, 2023

Pangenome calculation beyond the species level using RIBAP: A comprehensive bacterial core genome annotation pipeline based on Roary and pairwise ILPs

Kevin Lamkiewicz, Lisa-Marie Barf, Konrad Sachse, Martin Hölzer

RIBAP improves pangenome analysis by using ILP to refine gene clusters, outperforming existing tools in identifying core genes across diverse bacterial genomes.

2 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 10, 2022

Extensive genomic divergence among 61 strains of Chlamydia psittaci

Konrad Sachse, Martin Hölzer, Fabien Vorimore…·Manja Marz

The paper analyzes 61 Chlamydia psittaci genomes to identify genomic features correlated with host tropism and phylogeny.

2 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky