Konrad Sachse

RIBAP improves pangenome analysis by using ILP to refine gene clusters, outperforming existing tools in identifying core genes across diverse bacterial genomes.

The paper assembles 35 European Mycoplasma bovis genomes using a hybrid approach, identifies clade-specific genes, and reveals geographic clustering in a phylogenetic tree.

The paper analyzes 61 Chlamydia psittaci genomes to identify genomic features correlated with host tropism and phylogeny.

EpiDope uses a deep neural network to predict linear B-cell epitopes with higher accuracy than existing tools, reducing laboratory costs and time.