Author

Kavya Swaminathan

Stanford MedicineORCID 0000-0001-7715-5375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1 Organism:virus· 1

Frequent Co-Authors

Joshua Eric EliasiD· 2 shared Niclas OlssoniD· 2 shared Alessandro SetteiD· 1 shared Arun Devabhaktuni· 1 shared Aruna D. de Silva· 1 shared Caleb D. Marceau· 1 shared Carlos Gonzales· 1 shared Daniela WeiskopfiD· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersImmunology

Joshua Eric EliasORCID

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2 papers

Recent·Most cited

ImmunologybioRxivPreprintNov 19, 2018

Immuno-proteomic interrogation of dengue infection reveals novel HLA haplotype-specific MHC-I antigens

Kavya Swaminathan, Niclas Olsson, Peder J. Lund…·Joshua E. Elias

This study identifies novel MHC-I antigens specific to dengue virus infection using an immuno-proteomics approach, revealing ligands associated with distinct HLA haplotypes and T-cell recognition.

DOI 10.1101/471821

virusproteomics

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BioinformaticsbioRxivPreprintMar 15, 2018

Measuring proteomes with long strings: A new, unconstrained paradigm in mass spectrum interpretation

Arun Devabhaktuni, Niclas Olsson, Carlos Gonzales…·Joshua Eric Elias

The paper introduces TagGraph, a software tool that improves PTM identification in proteomics by addressing search space size and identification accuracy challenges, resulting in tripled confident identifications and expanded knowledge of PTM sites.

3 citations

humanproteomics

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