Author

Matthew N. Rouse

Agricultural Research ServiceORCID 0000-0001-7763-8203Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:experimental assay· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Brian Joel SteffensoniD· 2 shared Matthew MoscouiD· 2 shared Oadi MatnyiD· 2 shared Alexis Feist· 1 shared Alina R. AkhunovaiD· 1 shared Brande B. H. WulffiD· 1 shared Burkhard SteuernageliD· 1 shared Dhara BhattiD· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersGenomics

Brian Joel SteffensonORCID

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4 papers

Recent·Most cited

Plant BiologybioRxivPreprintOct 14, 2026

Rye stem rust is a reservoir of diversity and virulence for wheat stem rust

Thomas W. Ingram, Molly L. Veregge, Pablo Olivera Firpo…·Matthew Moscou

The paper analyzes 385 Pg genomes to show Kazakhstan hosts a diverse sexual clade with many HD haplotypes, and Pgs contributes virulent alleles to wheat rust pathogens.

DOI 10.64898/2026.10.12.758526

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedMay 28, 2026

Haplotype-phased genomes of the barley leaf rust pathogen reveal evidence of repeat element expansion and somatic hybridization

Rebecca Spanner, Eric S. Nazareno, Eva C. Henningsen…·Brian Joel Steffenson

The paper presents haplotype-phased, chromosome-scale genomes of Puccinia hordei isolates, revealing repeat expansion, somatic hybridization, and genome plasticity.

1 citation

whole-genome sequencingexperimental assay

𝕏 PostBluesky

GenomicsPLoS ONEPeer-reviewedSep 20, 2019

Bulked segregant analysis RNA-seq (BSR-Seq) validated a stem resistance locus in Aegilops umbellulata, a wild relative of wheat

Erena A. Edae, Matthew N. Rouse

The paper validates a stem rust resistance QTL on chromosome 2U of Ae. umbellulata using bulk segregant analysis and refines its position to 3.2 Mbp.

35 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky

Plant BiologybioRxivPreprintJul 23, 2018

The wheat Sr22, Sr33, Sr35 and Sr45 genes confer resistance against stem rust in barley

M. Asyraf Md. Hatta, Ryan Johnson, Oadi Matny…·Brande B. H. Wulff

This study assesses the functionality of cloned wheat Sr genes in barley, finding that Sr22, Sr33, Sr35, and Sr45 confer effective resistance against stem rust caused by Puccinia graminis f. sp. tritici.

DOI 10.1101/374637

experimental assay

𝕏 PostBluesky